12/17/2019 - (last updated: 2019-12-17)
docker run
with -it
and --rm
options-v
optiondocker images
docker rmi IMAGE_NAME
docker container ls
with optional -a
or -aq
docker rm CONTAINER_ID
to remove a containerpull
images and use appropriate tag
if necessarySelect Docker images from Docker Hub
Use multiple Docker container to accomplish related tasks
Docker images and Docker files
Learn about, and bypass ENTRYPOINT
of Docker images
We’ll use 3 images from the Bioinformatics Docker Images Project
clustalomega - Sequence alignment - (doc)
sratoolkit - Operations on Sequence Read Archive SRA database - (doc)
We’ll run clustalomega
from outside
We’ll encounter 2 errors:
FATAL: Cowardly refusing to overwrite already existing file
unexpected argument "/bin/sh"
This command will fail:
docker run -it --rm pegi3s/clustalomega /bin/sh
ENTRYPOINT