A Full sequence alignments
Results frrom TCoffee run within docker with command:
Note: the alignment is reported here in Clustal format. Other miscellaneous output is not shown.
CLUSTAL FORMAT for T-COFFEE Version_13.41.123.92238f3 [http://www.tcoffee.org]
[MODE: psicoffee ], CPU=1.22 sec, SCORE=990, Nseq=17, Len=1283
SARS-CoV-2 MFVFLV-L--LPLVSS----QCVNLTTRTQLPPAYTNSFTRGVYYPDKVF 43
SARSr-CoV_RaTG13 MFVFLV-L--LPLVSS----QCVNLTTRTQLPPAYTNSSTRGVYYPDKVF 43
SARS-CoV_Urbani MFIFLL-F--LTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIF 47
SARS-CoV_CUHK-W1 MFIFLL-F--LTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIF 47
SARS-CoV_GZ02 MFIFLL-F--LTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIF 47
SARS-CoV_A031 MFIFLL-F--LTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIF 47
SARS-CoV_A022 MFIFLL-F--LTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIF 47
WIV16 MFIFLF-F--LTLTSGSDLESCTTFDDVQAPNYPQHSSSRRGVYYPDEIF 47
WIV1 MKLLVLVF--ATLVSSYTIEKCLDFDDRTPPANTQFLSSHRGVYYPDDIF 48
SARSr-CoV_ZXC21 MLFFLF-LQFALVNSQCDLTGRTPL----NP--NYTNSSQRGVYYPDTIY 43
SARSr-CoV_ZC45 MLFFLF-L-----QFALVNSQCVNLTGRTPLNPNYTNSSQRGVYYPDTIY 44
SARSr-CoV_Rp3 MKILIL-A--FLASLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIF 47
SARSr-CoV_Rs672 MKVLIV-L--LCLGLVTAQDGCGHISTKPQPLMDKFSSSRRGVYYNDDIF 47
6VXX ---------------------------------AYTNSFTRGVYYPDKVF 17
6VYB ---------------------------------AYTNSFTRGVYYPDKVF 17
2AJF -------------------------------------------------- 0
6LZG -------------------------------------------------- 0
SARS-CoV-2 RSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA 93
SARSr-CoV_RaTG13 RSSVLHLTQDLFLPFFSNVTWFHAIHVSGTNGIKRFDNPVLPFNDGVYFA 93
SARS-CoV_Urbani RSDTLYLTQDLFLPFYSNVTGFHTINHT-------FGNPVIPFKDGIYFA 90
SARS-CoV_CUHK-W1 RSDTLYLTQDLFLPFYSNVTGFHTINHT-------FDNPVIPFKDGIYFA 90
SARS-CoV_GZ02 RSDTLYLTQDLFLPFYSNVTGFHTINHT-------FDNPVIPFKDGIYFA 90
SARS-CoV_A031 RSDTLYLTQDLFLPFYSNVTGFHTINHT-------FDNPVIPFKDGIYFA 90
SARS-CoV_A022 RSDTLYLTQDLFLPFYSNVTGFHTINHT-------FDNPVIPFKDGIYFA 90
WIV16 RSDTLYLTQDLFLPFYSNVTGFHTINHR-------FDNPVIPFKDGVYFA 90
WIV1 RSNVLHLVQDHFLPFDSNVTRFITFGLN-------FDNPIIPFKDGIYFA 91
SARSr-CoV_ZXC21 RSDTLVLSQGYFLPFYSNVSWYYSLTTNNAAT-KRTDNPILDFKDGIYFA 92
SARSr-CoV_ZC45 RSDTLVLSQGYFLPFYSNVSWYYSLTTNNAAT-KRTDNPILDFKDGIYFA 93
SARSr-CoV_Rp3 RSNVLHLTQDYFLPFDSNLTQYFSLNVDSDRF-TYFDNPILDFGDGVYFA 96
SARSr-CoV_Rs672 RSDVLHLTQDYFLPFDTNLTRYLSFNMDSATK-VYFDNPTLPFGDGIYFA 96
6VXX RSSVLHSTQDLFLPFFSNVTWFHAIH----------DNPVLPFNDGVYFA 57
6VYB RSSVLHSTQDLFLPFFSNVTWFHAI------------HPVLPFNDGVYFA 55
2AJF -------------------------------------------------- 0
6LZG -------------------------------------------------- 0
SARS-CoV-2 STEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGV 143
SARSr-CoV_RaTG13 STEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGV 143
SARS-CoV_Urbani ATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAV 140
SARS-CoV_CUHK-W1 ATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAV 140
SARS-CoV_GZ02 ATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAV 140
SARS-CoV_A031 ATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFVV 140
SARS-CoV_A022 ATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFVV 140
WIV16 ATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAV 140
WIV1 ATEKSNVIRGWVFGSTMNNKSQSVIIMNNSTNLVIRACNFELCDNPFFVV 141
SARSr-CoV_ZXC21 ATEHSNIVRGWIFGTTLDNTSQSLLIVNNATNVIIKVCNFDFCYDPYLSG 142
SARSr-CoV_ZC45 ATEHSNIIRGWIFGTTLDNTSQSLLIVNNATNVIIKVCNFDFCYDPYLSG 143
SARSr-CoV_Rp3 ATEKSNVIRGWIFGSTFDNTTQSAVIVNNSTHIIIRVCNFNLCKEPMYTV 146
SARSr-CoV_Rs672 ATEKSNVVRGWIFGSTMDNTTQSAIIVNNSTHIIIRVCYFNLCKEPMYAI 146
6VXX STEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGV 107
6VYB STEKSNIIRGWIFGTTLDSK--SLLIVNNATNVVIKVCEFQFCNDPFLGV 103
2AJF -------------------------------------------------- 0
6LZG -------------------------------------------------- 0
SARS-CoV-2 ---YYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLR 190
SARSr-CoV_RaTG13 ---YYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLR 190
SARS-CoV_Urbani ---SK----PMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
SARS-CoV_CUHK-W1 ---SK----PMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
SARS-CoV_GZ02 ---SK----PMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
SARS-CoV_A031 ---SK----PMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
SARS-CoV_A022 ---SK----PMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
WIV16 ---SK----PTGTQTHTMIFDNAFNCTFEYISDSFSLDVAEKSGNFKHLR 183
WIV1 ---LK----SNNTQIPSYIFNNAFNCTFEYVSKDFNLDLGEKPGNFKDLR 184
SARSr-CoV_ZXC21 YYHNN----KTWSIREFAVYSFYANCTFEYVSKSFMLNISGNGGLFNTLR 188
SARSr-CoV_ZC45 YYHNN----KTWSIREFAVYSSYANCTFEYVSKSFMLNISGNGGLFNTLR 189
SARSr-CoV_Rp3 ---SR------GAQQSSWVYQSAFNCTYDRVEKSFQLDTAPKTGNFKDLR 187
SARSr-CoV_Rs672 ---SN------EQHYKSWVYQNAYNCTYDRVEQSFQLDTAPQTGNFKDLR 187
6VXX ------------------------NCTFEYVS-------------FKNLR 120
6VYB -------------------------CTFEYVS-------------FKNLR 115
2AJF -------------------------------------------------- 0
6LZG -------------------------------------------------- 0
SARS-CoV-2 EFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT 240
SARSr-CoV_RaTG13 EFVFKNIDGYFKIYSKHTPINLVRDLPPGFSALEPLVDLPIGINITRFQT 240
SARS-CoV_Urbani EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRA 233
SARS-CoV_CUHK-W1 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRA 233
SARS-CoV_GZ02 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRA 233
SARS-CoV_A031 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGIKITNFRA 233
SARS-CoV_A022 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGIKITNFRA 233
WIV16 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNILKPIFKLPLGINITNFRA 233
WIV1 EFVFRNKDGFLHVYSGYQPISAASGLPTGFNALKPIFKLPLGINITNFRT 234
SARSr-CoV_ZXC21 EFVFRNVDGHFKIYSKFTPVNLNRGLPTGLSVLQPLVELPVSINITKFRT 238
SARSr-CoV_ZC45 EFVFRNVDGHFKIYSKFTPVNLNRGLPTGLSVLQPLVELPVSINITKFRT 239
SARSr-CoV_Rp3 EYVFKNRDGFLSVYQTYTAVNLPRGLPIGFSVLRPILKLPFGINITSYRV 237
SARSr-CoV_Rs672 EYVFKNKDGFLSVYNAYSPIDIPRGLPVGFSVLKPILKLPISINITSFKV 237
6VXX EFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT 170
6VYB EFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT 165
2AJF -------------------------------------------------- 0
6LZG -------------------------------------------------- 0
SARS-CoV-2 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVD 290
SARSr-CoV_RaTG13 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVD 290
SARS-CoV_Urbani ILTAFSP------AQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVD 277
SARS-CoV_CUHK-W1 ILTAFSP------AQDTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVD 277
SARS-CoV_GZ02 ILTAFLP------AQDTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVD 277
SARS-CoV_A031 ILTAFSP------AQGTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVD 277
SARS-CoV_A022 ILTAFSP------AQGTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVD 277
WIV16 ILTAFLP------AQDTWGTSAAAYFVGYLKPATFMLKYDENGTITDAVD 277
WIV1 LLTAFPP------RPDYWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVD 278
SARSr-CoV_ZXC21 LLTIHRGD---PMSNNGWTAFSAAYFVGYLKPRTFMLKYNENGTITDAVD 285
SARSr-CoV_ZC45 LLTIHRGD---PMPNNGWTAFSAAYFVGYLKPRTFMLKYNENGTITDAVD 286
SARSr-CoV_Rp3 VMAMFSQ------TTSNFLPESAAYYVGNLKYTTFMLSFNENGTITNAID 281
SARSr-CoV_Rs672 VMSMFSR------TTSNFLPEVAAYFVGNLKYSTFMLNFNENGTITDAID 281
6VXX LLALH-----------------AAYYVGYLQPRTFLLKYNENGTITDAVD 203
6VYB LL--------------------AAYYVGYLQPRTFLLKYNENGTITDAVD 195
2AJF -------------------------------------------------- 0
6LZG -------------------------------------------------- 0
SARS-CoV-2 CALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE 340
SARSr-CoV_RaTG13 CALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTDSIVRFPNITNLCPFGE 340
SARS-CoV_Urbani CSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGE 327
SARS-CoV_CUHK-W1 CSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGE 327
SARS-CoV_GZ02 CSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSRDVVRFPNITNLCPFGE 327
SARS-CoV_A031 CSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGE 327
SARS-CoV_A022 CSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGE 327
WIV16 CSQNPLAELKCSVKSFEIDKGIYQTSNFRVAPSKEVVRFPNITNLCPFGE 327
WIV1 CSQNPLAELKCSVKSFEIDKGIYQTSNFRVAPSKEVVRFPNITNLCPFGE 328
SARSr-CoV_ZXC21 CALDPLSETKCTLKSLSVQKGIYQTSNFRVQPTQSIVRFPNITNVCPFHK 335
SARSr-CoV_ZC45 CALDPLSETKCTLKSLTVQKGIYQTSNFRVQPTQSVVRFPNITNVCPFHK 336
SARSr-CoV_Rp3 CAQNPLAELKCTIKNFNVSKGIYQTSNFRVSPTQEVIRFPNITNRCPFDK 331
SARSr-CoV_Rs672 CAQNPLSELKCTIKNFNVSKGIYQTSNFRVSPTHEVIRFPNITNRCPFDK 331
6VXX CALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE 253
6VYB CALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE 245
2AJF ---------------------------------------------CPFGE 5
6LZG ------------------------------------------TNLCPFGE 8
*** :
SARS-CoV-2 VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDL 390
SARSr-CoV_RaTG13 VFNATTFASVYAWNRKRISNCVADYSVLYNSTSFSTFKCYGVSPTKLNDL 390
SARS-CoV_Urbani VFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDL 377
SARS-CoV_CUHK-W1 VFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDL 377
SARS-CoV_GZ02 VFNATKFPSVYAWERKRISNCVADYSVLYNSTFFSTFKCYGVSATKLNDL 377
SARS-CoV_A031 VFNATKFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDL 377
SARS-CoV_A022 VFNATKFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDL 377
WIV16 VFNATTFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDL 377
WIV1 VFNATTFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDL 378
SARSr-CoV_ZXC21 VFNATRFPSVYAWERTKISDCIADYTVFYNSTSFSTFKCYGVSPSKLIDL 385
SARSr-CoV_ZC45 VFNATRFPSVYAWERTKISDCIADYTVFYNSTSFSTFKCYGVSPSKLIDL 386
SARSr-CoV_Rp3 VFNATRFPNVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDL 381
SARSr-CoV_Rs672 VFNASRFPNVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDL 381
6VXX VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDL 303
6VYB VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDL 295
2AJF VFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKL--- 52
6LZG VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDL 58
****: *..****:*.:**:*:***:*:***: **********.:**
SARS-CoV-2 CFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNN 440
SARSr-CoV_RaTG13 CFTNVYADSFVITGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSKH 440
SARS-CoV_Urbani CFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRN 427
SARS-CoV_CUHK-W1 CFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRN 427
SARS-CoV_GZ02 CFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRN 427
SARS-CoV_A031 CFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRN 427
SARS-CoV_A022 CFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRN 427
WIV16 CFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFTGCVLAWNTRN 427
WIV1 CFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFTGCVLAWNTRN 428
SARSr-CoV_ZXC21 CFTSVYADTFLIRFSEVRQVAPGQTGVIADYNYKLPDDFTGCVIAWNTAK 435
SARSr-CoV_ZC45 CFTSVYADTFLIRFSEVRQVAPGQTGVIADYNYKLPDDFTGCVIAWNTAK 436
SARSr-CoV_Rp3 CFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAK 431
SARSr-CoV_Rs672 CFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAK 431
6VXX CFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNN 353
6VYB CFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNN 345
2AJF ---NVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRN 99
6LZG CFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNN 108
.****:*:: .:***:***:** ************ ***:***: :
SARS-CoV-2 LDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYF 490
SARSr-CoV_RaTG13 IDAKEGGNFNYLYRLFRKANLKPFERDISTEIYQAGSKPCNGQTGLNCYY 490
SARS-CoV_Urbani IDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTP-PALNCYW 476
SARS-CoV_CUHK-W1 IDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTP-PALNCYW 476
SARS-CoV_GZ02 IDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTP-PALNCYW 476
SARS-CoV_A031 IDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSSDGKPCTP-PAPNCYW 476
SARS-CoV_A022 IDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSSDGKPCTP-PAPNCYW 476
WIV16 IDATQTGNYNYKYRSLRHGKLRPFERDISNVPFSPDGKPCTP-PAFNCYW 476
WIV1 IDATQTGNYNYKYRSLRHGKLRPFERDISNVPFSPDGKPCTP-PAFNCYW 477
SARSr-CoV_ZXC21 QDTG-----HYFYRSHRSTKLKPFERDLSSDE--------------NGVR 466
SARSr-CoV_ZC45 QDVG-----NYFYRSHRSTKLKPFERDLSSDE--------------NGVR 467
SARSr-CoV_Rp3 QDQG-----QYYYRSHRKTKLKPFERDLSSDE--------------NGVR 462
SARSr-CoV_Rs672 QDQG-----QYYYRSSRKTKLKPFERDLTSDE--------------NGVR 462
6VXX LDS--KGNYNYLYR-------KPFERDIY--------------------F 374
6VYB LD-----NYNYLYRLFRKSNLKPFERDIST-------------------F 371
2AJF IDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTP-PALNCYW 148
6LZG LDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYF 158
* :* ** :*****:
SARS-CoV-2 PLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN 540
SARSr-CoV_RaTG13 PLYRYGFYPTDGVGHQPYRVVVLSFELLNAPATVCGPKKSTNLVKNKCVN 540
SARS-CoV_Urbani PLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVN 526
SARS-CoV_CUHK-W1 PLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVN 526
SARS-CoV_GZ02 PLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVN 526
SARS-CoV_A031 PLRGYGFYTTSGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVN 526
SARS-CoV_A022 PLRGYGFYTTSGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVN 526
WIV16 PLNDYGFYITNGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVN 526
WIV1 PLNDYGFYITNGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVN 527
SARSr-CoV_ZXC21 TLSTYDFNPNVPLEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVN 516
SARSr-CoV_ZC45 TLSTYDFNPNVPLEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVN 517
SARSr-CoV_Rp3 TLSTYDFYPSVPVAYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVN 512
SARSr-CoV_Rs672 TLSTYDFYPNVPIEYQATRVVVLSFELLNAPATVCGPKLSTGLVKNQCVN 512
6VXX PLQSYGFQPT-NVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN 423
6VYB PLQSYGFQPT-NVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN 420
2AJF PLNDYGFYTTTGIGYQPYRVVVLSFE------------------------ 174
6LZG PLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP------------- 195
.* *.* . : :*. ********
SARS-CoV-2 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPC 590
SARSr-CoV_RaTG13 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPC 590
SARS-CoV_Urbani FNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPC 576
SARS-CoV_CUHK-W1 FNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPC 576
SARS-CoV_GZ02 FNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPC 576
SARS-CoV_A031 FNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPC 576
SARS-CoV_A022 FNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPC 576
WIV16 FNFNGLTGTGVLTPSSKRFQPFQQFGRDVLDFTDSVRDPKTSEILDISPC 576
WIV1 FNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPC 577
SARSr-CoV_ZXC21 FNFNGLKGTGVLTDSSKRFQSFQQFGKDASDFIDSVRDPQTLEILDITPC 566
SARSr-CoV_ZC45 FNFNGLKGTGVLTDSSKRFQSFQQFGKDASDFIDSVRDPQTLEILDITPC 567
SARSr-CoV_Rp3 FNFNGLKGTGVLTESSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPC 562
SARSr-CoV_Rs672 FNFNGLKGTGVLTDSSKRFQSFQQFGRDTSDFTDSVRDPQTLQILDITPC 562
6VXX FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPC 473
6VYB FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPC 470
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 SFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS 640
SARSr-CoV_RaTG13 SFGGVSVITPGTNASNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS 640
SARS-CoV_Urbani SFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGN 626
SARS-CoV_CUHK-W1 SFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGN 626
SARS-CoV_GZ02 SFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGN 626
SARS-CoV_A031 SFGGVSVITPGTNASSEVAVLYQDVNCTDVSTLIHAEQLTPAWRIYSTGN 626
SARS-CoV_A022 SFGGVSVITPGTNASSEVAVLYQDVNCTDVSTLIHAEQLTPAWRIYSTGN 626
WIV16 SFGGVSVITPGTNTSSEVAVLYQDVNCTDVPVAIHADQLTPSWRVYSTGN 626
WIV1 SFGGVSVITPGTNTSSEVAVLYQDVNCTDVPVAIHADQLTPSWRVHSTGN 627
SARSr-CoV_ZXC21 SFGGVSVITPGTNTSSEVAVLYQDVNCTDVPTTIHADQLTPAWRIYAIGT 616
SARSr-CoV_ZC45 SFGGVSVITPGTNTSLEVAVLYQDVNCTDVPTTIHADQLTPAWRIYATGT 617
SARSr-CoV_Rp3 SFGGVSVITPGTNASSEVAVLYQDVNCTDVPAAIHADQLTPAWRVYSTGT 612
SARSr-CoV_Rs672 SFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGV 612
6VXX SFGGVSVITPGTNTSNQVAVLYQDVNCTEV-------------------- 503
6VYB SFGGVSVITPGTNTSNEVAVLYQDVNCTEV-------------------- 500
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQ 690
SARSr-CoV_RaTG13 NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQT----NSRSVASQ 686
SARS-CoV_Urbani NVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVS----LLRSTSQK 672
SARS-CoV_CUHK-W1 NVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVS----LLRSTSQK 672
SARS-CoV_GZ02 NVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVS----LLRSTSQK 672
SARS-CoV_A031 NVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVS----SLRSTSQK 672
SARS-CoV_A022 NVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVS----SLRSTSQK 672
WIV16 NVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVS----SLRSTSQK 672
WIV1 NVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVS----SLRSTSQK 673
SARSr-CoV_ZXC21 SVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTAS----ILRSTGQK 662
SARSr-CoV_ZC45 NVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTAS----ILRSTSQK 663
SARSr-CoV_Rp3 NVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTAS----TLRSVGQK 658
SARSr-CoV_Rs672 NVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTAS----TLRSVGQK 658
6VXX NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQT------------SQ 541
6VYB NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQT-------------Q 537
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 SIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTM 740
SARSr-CoV_RaTG13 SIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTM 736
SARS-CoV_Urbani SIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
SARS-CoV_CUHK-W1 SIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
SARS-CoV_GZ02 SIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
SARS-CoV_A031 SIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
SARS-CoV_A022 SIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
WIV16 SIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
WIV1 SIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 723
SARSr-CoV_ZXC21 AIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTSVDCTM 712
SARSr-CoV_ZC45 AIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTSVDCTM 713
SARSr-CoV_Rp3 SIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTSVDCTM 708
SARSr-CoV_Rs672 SIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTSVDCTM 708
6VXX SIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTM 591
6VYB SIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTM 587
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 YICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYK 790
SARSr-CoV_RaTG13 YICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYK 786
SARS-CoV_Urbani YICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYK 772
SARS-CoV_CUHK-W1 YICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYK 772
SARS-CoV_GZ02 YICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYK 772
SARS-CoV_A031 YICGDSTECANLLLQYGSFCRQLNRALSGIAAEQDRNTREVFVQVKQMYK 772
SARS-CoV_A022 YICGDSTECANLLLQYGSFCRQLNRALSGIAAEQDRNTREVFVQVKQMYK 772
WIV16 YICGDSTECANLLLQYGSFCTQLNRALSGIAVEQDRNTREVFAQVKQMYK 772
WIV1 YICGDSTECANLLLQYGSFCTQLNRALSGIAVEQDRNTREVFAQVKQMYK 773
SARSr-CoV_ZXC21 YICGDSIECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQIYK 762
SARSr-CoV_ZC45 YICGDSIECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQIYK 763
SARSr-CoV_Rp3 YICGDSLECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQMYK 758
SARSr-CoV_Rs672 YICGDSQECSNLLLQYGSFCTQLNRALTGVALEQDKNTQEVFAQVKQMYK 758
6VXX YICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYK 641
6VYB YICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYK 637
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 TPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 840
SARSr-CoV_RaTG13 TPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 836
SARS-CoV_Urbani TPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGEC 822
SARS-CoV_CUHK-W1 TPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGEC 822
SARS-CoV_GZ02 TPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGEC 822
SARS-CoV_A031 TPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGQC 822
SARS-CoV_A022 TPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGQC 822
WIV16 TPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGEC 822
WIV1 TPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGEC 823
SARSr-CoV_ZXC21 TPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 812
SARSr-CoV_ZC45 TPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 813
SARSr-CoV_Rp3 TPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGEC 808
SARSr-CoV_Rs672 TPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGEC 808
6VXX TPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVT------------- 678
6VYB TPPIKDFGGFNFSQILPDPSK-SKRSFIEDLLFNKVT------------- 673
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGA 890
SARSr-CoV_RaTG13 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGA 886
SARS-CoV_Urbani LGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA 872
SARS-CoV_CUHK-W1 LGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA 872
SARS-CoV_GZ02 LGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA 872
SARS-CoV_A031 LGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA 872
SARS-CoV_A022 LGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA 872
WIV16 LGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA 872
WIV1 LGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA 873
SARSr-CoV_ZXC21 LGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALISGTATAGWTFGA 862
SARSr-CoV_ZC45 LGGISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALISGTATAGWTFGA 863
SARSr-CoV_Rp3 LGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGA 858
SARSr-CoV_Rs672 LGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGA 858
6VXX -------------KFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGA 715
6VYB --------------FNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGA 709
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSS 940
SARSr-CoV_RaTG13 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSS 936
SARS-CoV_Urbani GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTT 922
SARS-CoV_CUHK-W1 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTT 922
SARS-CoV_GZ02 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTT 922
SARS-CoV_A031 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTT 922
SARS-CoV_A022 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTT 922
WIV16 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTT 922
WIV1 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTT 923
SARSr-CoV_ZXC21 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLTS 912
SARSr-CoV_ZC45 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLTS 913
SARSr-CoV_Rp3 GSALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTT 908
SARSr-CoV_Rs672 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTT 908
6VXX GAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSS 765
6VYB GAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSS 759
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 TASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 990
SARSr-CoV_RaTG13 TASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 986
SARS-CoV_Urbani TSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 972
SARS-CoV_CUHK-W1 TSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 972
SARS-CoV_GZ02 TSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 972
SARS-CoV_A031 TSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 972
SARS-CoV_A022 TSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 972
WIV16 TSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 972
WIV1 TSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 973
SARSr-CoV_ZXC21 TASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 962
SARSr-CoV_ZC45 TASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 963
SARSr-CoV_Rp3 TSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 958
SARSr-CoV_Rs672 TSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 958
6VXX TASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAE 815
6VYB TASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAE 809
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1040
SARSr-CoV_RaTG13 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1036
SARS-CoV_Urbani VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1022
SARS-CoV_CUHK-W1 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1022
SARS-CoV_GZ02 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1022
SARS-CoV_A031 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1022
SARS-CoV_A022 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1022
WIV16 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1022
WIV1 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1023
SARSr-CoV_ZXC21 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1012
SARSr-CoV_ZC45 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1013
SARSr-CoV_Rp3 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1008
SARSr-CoV_Rs672 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVPGQSKRV 1008
6VXX VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 865
6VYB VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 859
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFP 1090
SARSr-CoV_RaTG13 DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFP 1086
SARS-CoV_Urbani DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFP 1072
SARS-CoV_CUHK-W1 DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFP 1072
SARS-CoV_GZ02 DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFP 1072
SARS-CoV_A031 DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFP 1072
SARS-CoV_A022 DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFP 1072
WIV16 DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFP 1072
WIV1 DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFP 1073
SARSr-CoV_ZXC21 DFCGKGYHLMSFPQSAPHGVVFLHVTYIPSQEKNFTTAPAICHEGKAHFP 1062
SARSr-CoV_ZC45 DFCGKGYHLMSFPQSAPHGVVFLHVTYIPSQEKNFTTAPAICHEGKAHFP 1063
SARSr-CoV_Rp3 DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFP 1058
SARSr-CoV_Rs672 DFCGRGYHLMSFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGKAYFP 1058
6VXX DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFP 915
6VYB DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFP 909
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140
SARSr-CoV_RaTG13 REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGSCDVVIGIVNNTVYDP 1136
SARS-CoV_Urbani REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDP 1122
SARS-CoV_CUHK-W1 REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDP 1122
SARS-CoV_GZ02 REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDP 1122
SARS-CoV_A031 REGVFVFSGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDP 1122
SARS-CoV_A022 REGVFVFSGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDP 1122
WIV16 REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGSCDVVIGIINNTVYDP 1122
WIV1 REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGSCDVVIGIINNTVYDP 1123
SARSr-CoV_ZXC21 REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIINNTVYDP 1112
SARSr-CoV_ZC45 REGVFVSNGTHWFVTQRNFYEPKIITTDNTFVSGNCDVVIGIINNTVYDP 1113
SARSr-CoV_Rp3 REGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP 1108
SARSr-CoV_Rs672 REGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDP 1108
6VXX REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 965
6VYB REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 959
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVA 1190
SARSr-CoV_RaTG13 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVA 1186
SARS-CoV_Urbani LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVA 1172
SARS-CoV_CUHK-W1 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVA 1172
SARS-CoV_GZ02 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQEEIDRLNEVA 1172
SARS-CoV_A031 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQEEIDRLNEVA 1172
SARS-CoV_A022 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQEEIDRLNEVA 1172
WIV16 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVA 1172
WIV1 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVA 1173
SARSr-CoV_ZXC21 LQPELDSFKEELDKYFKNHTSPDIDLGDISGINASVVNIQKEIDRLNEVA 1162
SARSr-CoV_ZC45 LQPELDSFKEELDKYFKNHTSPDIDLGDISGINASVVNIQKEIDRLNEVA 1163
SARSr-CoV_Rp3 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVA 1158
SARSr-CoV_Rs672 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVA 1158
6VXX LQPELDS------------------------------------------- 972
6VYB LQPELDS------------------------------------------- 966
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSC 1240
SARSr-CoV_RaTG13 KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIIMVTIMLCCMTSC 1236
SARS-CoV_Urbani KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1222
SARS-CoV_CUHK-W1 KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1222
SARS-CoV_GZ02 KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1222
SARS-CoV_A031 KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1222
SARS-CoV_A022 KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1222
WIV16 KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1222
WIV1 KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1223
SARSr-CoV_ZXC21 RNLNESLIDLQELGKYEHYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1212
SARSr-CoV_ZC45 RNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1213
SARSr-CoV_Rp3 KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1208
SARSr-CoV_Rs672 KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMATILLCCMTSC 1208
6VXX -------------------------------------------------- 972
6VYB -------------------------------------------------- 966
2AJF -------------------------------------------------- 174
6LZG -------------------------------------------------- 195
SARS-CoV-2 CSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT 1273
SARSr-CoV_RaTG13 CSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT 1269
SARS-CoV_Urbani CSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1255
SARS-CoV_CUHK-W1 CSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1255
SARS-CoV_GZ02 CSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1255
SARS-CoV_A031 CSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1255
SARS-CoV_A022 CSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1255
WIV16 CSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1255
WIV1 CSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1256
SARSr-CoV_ZXC21 CSCLKGCCSCGFCCKFDEDDSEPVLKGVKLHYT 1245
SARSr-CoV_ZC45 CSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT 1246
SARSr-CoV_Rp3 CSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1241
SARSr-CoV_Rs672 CSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1241
6VXX --------------------------------- 972
6VYB --------------------------------- 966
2AJF --------------------------------- 174
6LZG --------------------------------- 195