B PyMOL scripts

# Fetch chain A only of PDB 6VYB
fetch 6VYBA
as cartoon
hide sticks
color lightblue
color tv_red, resi 673-693
set label_size, 30
set label_position =[-1, 1, 8]
set label_color, black
label /6VYBA/A/A/THR`676/CA, "THR 676"
label /6VYBA/A/A/GLN`690/CA, "GLN 690"
bg_color white

set_view (\
     0.286217600,   -0.011345523,   -0.958088458,\
    -0.948126435,    0.140928283,   -0.284912586,\
     0.138257042,    0.989944160,    0.029574998,\
     0.003286857,   -0.003728534,  -50.905109406,\
   174.548110962,  232.581466675,  187.326797485,\
   -69.996986389,  173.154022217,  -20.000000000 )

set ray_trace_mode, 1
png cov2-spike-6VYB.png, 1400, dpi=300, ray=1